<?xml version="1.0" encoding="UTF-8"?>
<s:scufl xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha" version="0.2" log="0">
  <s:workflowdescription lsid="urn:lsid:www.mygrid.org.uk:operation:VZJS5NJL4P0" author="Paul Fisher" title="BLASTP with simplified results returned">Perform a blastp search on protein sequence and extract information based on the user input, e.g. a list of GI numbers.

N.B. this workflow does not function correctly as it is designed for use with NCBI blast scripts. Some errors may occur. Please use two blast text file inputs for a secure result output.</s:workflowdescription>
  <s:processor name="species_filter" boring="true">
    <s:stringconstant>Human, Mouse</s:stringconstant>
  </s:processor>
  <s:processor name="chromosome_filter" boring="true">
    <s:stringconstant>1, 2, 3, 4, 5, 6, 7, 8, 9, 10</s:stringconstant>
  </s:processor>
  <s:processor name="blast_ddbj">
    <s:arbitrarywsdl>
      <s:wsdl>http://xml.nig.ac.jp/wsdl/Blast.wsdl</s:wsdl>
      <s:operation>searchSimple</s:operation>
    </s:arbitrarywsdl>
  </s:processor>
  <s:processor name="blastfilecomparer">
    <s:description>Compares a new BLAST file output with an older BLAST file output to check for new hits</s:description>
    <s:soaplabwsdl>http://phoebus.cs.man.ac.uk:1977/axis/services/seq_analysis.blastfilecomparer</s:soaplabwsdl>
  </s:processor>
  <s:link source="blast_ddbj:Result" sink="blastfilecomparer:blastResult_direct_data" />
  <s:link source="database" sink="blast_ddbj:database" />
  <s:link source="program" sink="blast_ddbj:program" />
  <s:link source="query" sink="blast_ddbj:query" />
  <s:link source="blast_ddbj:Result" sink="blast_output" />
  <s:link source="blastfilecomparer:output" sink="compared_output" />
  <s:link source="chromosome_filter:value" sink="blastfilecomparer:chromo" />
  <s:link source="species_filter:value" sink="blastfilecomparer:species" />
  <s:source name="database" />
  <s:source name="program" />
  <s:source name="query" />
  <s:sink name="blast_output" />
  <s:sink name="compared_output" />
</s:scufl>


